Non-intrusive technologies for the in-situ measurement of river morphological features are increasingly popular in the scientific and practice communities due to their efficient and productive data acquisition. While the measurement of suspended load with optical and acoustic technologies is currently an active area of research, the measurement of bedform dynamics has not experienced similar progress. We have successfully demonstrated through laboratory experiments that, by combining acoustic mapping with image velocimetry concepts, we can characterize the planar dynamics of the bedform migration. The technique, labeled Acoustic Mapping Velocimetry (AMV), is currently transferred to field conditions using multiple-beam echo-sounders (MBES) for producing acoustic maps. During this transfer, new questions emerged because, in field conditions, many of the morphologic features targeted by AMV measurements are not a priori known. Moreover, the image velocimetry processing can be approached with several alternatives, each of them characterized by strength and limitations. This paper assembles guidelines for establishing optimal parameters for the acquisition of the acoustic maps based on analytical considerations, and for selecting essential features of the processing for image velocimetry. We test these guidelines using MBES data acquired in the Mississippi River.